Transcript: lnc-RNASE1-2:3

Basic information

LNCipedia transcript ID: lnc-RNASE1-2:3 
LNCipedia gene ID: lnc-RNASE1-2
Ensembl Gene ID: ENSG00000258451
Ensembl Transcript ID: ENST00000554286
Location (hg38): chr14:20693480-20707120
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 915 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000554286; ENST00000554286.1; RP11-903H12.3-001; OTTHUMT00000411230.1; NONHSAT035604
Alternative gene names: ENSG00000258451; RP11-903H12.3; ENSG00000258451.1; OTTHUMG00000171012.1; AL163636.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -7.1185 non-coding 
CPAT coding probability 12.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RNASE1-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-OR6S1-1:1
3.1 lnc-OR6S1-1:1
4.0 lnc-OR6S1-1:1
4.1 lnc-RNASE1-2:3
5.0 lnc-RNASE1-2:3
5.1 lnc-TEP1-17:3
5.2 lnc-RNASE1-2:3