Transcript: lnc-OXR1-1:1

Basic information

LNCipedia transcript ID: lnc-OXR1-1:1 
LNCipedia gene ID: lnc-OXR1-1
Ensembl Gene ID: ENSG00000254615
Ensembl Transcript ID: ENST00000521369
Location (hg38): chr8:106270144-106272899
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1318 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000521369.2; RP11-395G23.3-001; OTTHUMT00000380411.3; NONHSAT128251
Alternative gene names: ENSG00000254615.2; RP11-395G23.3; OTTHUMG00000156320.6; AC027031.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -37.4428 non-coding 
CPAT coding probability 2.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OXR1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-OXR1-1:1
4.0 lnc-OXR1-1:1
4.1 lnc-OXR1-1:1
5.0 lnc-OXR1-1:1
5.1 lnc-COLEC10-56:1
5.2 lnc-OXR1-1:1