Transcript: lnc-PABPC3-1:2

Basic information

LNCipedia transcript ID: lnc-PABPC3-1:2 
LNCipedia gene ID: lnc-PABPC3-1
Location (hg38): chr13:25118671-25119029
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 238 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00022147
Alternative gene names: XLOC_010319; linc-NUPL1-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -251.2761 non-coding 
CPAT coding probability 22.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PABPC3-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PABPC3-1:2
3.1 lnc-PABPC3-1:2
4.0 lnc-PABPC3-1:2
4.1 lnc-PABPC3-1:2
5.0 lnc-PABPC3-1:2
5.1 lnc-GTF3A-54:4
5.2 lnc-PABPC3-1:2