Transcript: LINC01657:4

Basic information

LNCipedia transcript ID: LINC01657:4 
HGNC Gene Symbol: LINC01657    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1657
Ensembl Gene ID: ENSG00000224718
Ensembl Transcript ID: ENST00000457217
Location (hg38): chr1:175877343-175880468
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1809 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000338; ENST00000457217; ENST00000457217.1; RP11-222A5.1-001; OTTHUMT00000084595.2; NONHSAT007761
Alternative gene names: XLOC_000470; linc-PAPPA2-2; ENSG00000224718; RP11-222A5.1; ENSG00000224718.1; OTTHUMG00000034949.2; LINC01657


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -96.2396 non-coding 
CPAT coding probability 13.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01657:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PAPPA2-2:1
3.1 lnc-PAPPA2-3:1
4.0 lnc-PAPPA2-3:1
4.1 lnc-PAPPA2-3:1
5.0 lnc-PAPPA2-3:1
5.1 LINC01657:2
5.2 LINC01657:4