Transcript: lnc-PAX9-2:1

Basic information

LNCipedia transcript ID: lnc-PAX9-2:1 
LNCipedia gene ID: lnc-PAX9-2
Ensembl Gene ID: ENSG00000258690
Ensembl Transcript ID: ENST00000557761
Location (hg38): chr14:36788644-36807163
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 526 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000557761.1; RP11-81F13.1-001; OTTHUMT00000410145.1; NONHSAT036449
Alternative gene names: ENSG00000258690.1; RP11-81F13.1; OTTHUMG00000170734.1; AL162464.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -110.6554 non-coding 
CPAT coding probability 12.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PAX9-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PAX9-2:1
4.0 lnc-PAX9-2:1
4.1 lnc-PAX9-2:1
5.0 lnc-PAX9-2:1
5.1 lnc-BRMS1L-37:1
5.2 lnc-PAX9-2:1