Transcript: lnc-PDE6C-5:1

Basic information

LNCipedia transcript ID: lnc-PDE6C-5:1 
LNCipedia gene ID: lnc-PDE6C-5
Ensembl Gene ID: ENSG00000280660
Ensembl Transcript ID: ENST00000630034
Location (hg38): chr10:93762453-93771991
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 8444 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000630034.1
Alternative gene names: ENSG00000280660.1; RP11-437J2.3; AL157396.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -7.3715 non-coding 
CPAT coding probability 1.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PDE6C-5:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-PDE6C-5:1
4.1 lnc-PDE6C-5:1
5.0 lnc-PDE6C-5:1
5.1 lnc-SMC3-235:1
5.2 lnc-PDE6C-5:1