Transcript: lnc-PDGFD-1:1

Basic information

LNCipedia transcript ID: lnc-PDGFD-1:1 
LNCipedia gene ID: lnc-PDGFD-1
Location (hg38): chr11:103841177-103848099
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 702 bp
Exons: 4
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00020125; NONHSAT023923
Alternative gene names: XLOC_009537; linc-DCUN1D5-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -108.1564 non-coding 
CPAT coding probability 2.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PDGFD-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PDGFD-1:1
3.1 lnc-PDGFD-1:1
4.0 lnc-PDGFD-1:1
4.1 lnc-PDGFD-1:1
5.0 lnc-PDGFD-1:1
5.1 lnc-DCUN1D5-8:6
5.2 lnc-PDGFD-1:1