Transcript: lnc-PDZD9-6:1

Basic information

LNCipedia transcript ID: lnc-PDZD9-6:1 
LNCipedia gene ID: lnc-PDZD9-6
Ensembl Gene ID: ENSG00000275445
Ensembl Transcript ID: ENST00000612618
Location (hg38): chr16:22007480-22008062
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 583 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000612618.1
Alternative gene names: ENSG00000275445.1; CTD-2649C14.3; AC092119.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -84.4723 non-coding 
CPAT coding probability 1.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PDZD9-6:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-PDZD9-6:1
4.1 lnc-PDZD9-6:1
5.0 lnc-PDZD9-6:1
5.1 lnc-MARF1-94:3
5.2 lnc-PDZD9-6:1