Transcript: lnc-PFKP-4:1

Basic information

LNCipedia transcript ID: lnc-PFKP-4:1 
LNCipedia gene ID: lnc-PFKP-4
Location (hg38): chr10:2984364-2985139
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 415 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00017762; ENST00000446337; ENST00000446337.1; RP11-178D16.1-001; OTTHUMT00000046449.1; NONHSAT010992
Alternative gene names: XLOC_008343; linc-PFKP-2; ENSG00000225430; RP11-178D16.1; ENSG00000225430.1; OTTHUMG00000017553.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -66.0371 non-coding 
CPAT coding probability 8.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PFKP-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PFKP-3:1
3.1 lnc-PFKP-4:1
4.0 lnc-PFKP-4:1
4.1 lnc-PFKP-4:1
5.0 lnc-PFKP-4:1
5.1 lnc-NPY4R2-534:1
5.2 lnc-PFKP-4:1