Transcript: lnc-PHF14-4:1

Basic information

LNCipedia transcript ID: lnc-PHF14-4:1 
LNCipedia gene ID: lnc-PHF14-4
Ensembl Gene ID: ENSG00000235431
Ensembl Transcript ID: ENST00000451755
Location (hg38): chr7:9961024-9981817
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 361 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00012949; ENST00000451755; ENST00000451755.1; AC006373.1-001; OTTHUMT00000324427.1; NONHSAT119176
Alternative gene names: XLOC_005984; linc-PHF14-2; ENSG00000235431; AC006373.1; ENSG00000235431.1; OTTHUMG00000151921.1; AC004936.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -239.8127 non-coding 
CPAT coding probability 3.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PHF14-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PHF14-2:1
3.1 lnc-PHF14-4:1
4.0 lnc-PHF14-4:1
4.1 lnc-PHF14-4:1
5.0 lnc-PHF14-4:1
5.1 lnc-SLC29A4-57:2
5.2 lnc-PHF14-4:1