Transcript: lnc-PHGDH-1:1

Basic information

LNCipedia transcript ID: lnc-PHGDH-1:1 
LNCipedia gene ID: lnc-PHGDH-1
Location (hg38): chr1:119601157-119602495
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 537 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000450675.1; RP4-599G15.3-001; OTTHUMT00000036344.1; NONHSAT005571
Alternative gene names: ENSG00000242959.1; RP4-599G15.3; OTTHUMG00000012959.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 113.2352 coding 
CPAT coding probability 0.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PHGDH-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PHGDH-1:1
4.0 lnc-PHGDH-1:1
4.1 lnc-PHGDH-1:1
5.0 lnc-PHGDH-1:1
5.1 lnc-HSD3B1-1:1
5.2 lnc-PHGDH-1:1