Transcript: lnc-PHOX2B-3:1

Basic information

LNCipedia transcript ID: lnc-PHOX2B-3:1 
LNCipedia gene ID: lnc-PHOX2B-3
Ensembl Gene ID: ENSG00000249771
Ensembl Transcript ID: ENST00000510772
Location (hg38): chr4:41883060-41894579
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 825 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007752; ENST00000510772; ENST00000510772.1; RP11-457P14.5-001; OTTHUMT00000360973.1; NONHSAT096178
Alternative gene names: XLOC_003938; linc-PHOX2B-1; ENSG00000249771; RP11-457P14.5; ENSG00000249771.1; OTTHUMG00000160529.1; AC108210.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -123.7579 non-coding 
CPAT coding probability 3.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PHOX2B-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PHOX2B-2:1
3.1 lnc-PHOX2B-3:1
4.0 lnc-PHOX2B-3:1
4.1 lnc-PHOX2B-3:1
5.0 lnc-PHOX2B-3:1
5.1 lnc-GABRA4-23:1
5.2 lnc-PHOX2B-3:1