Transcript: lnc-PITX1-2:1

Basic information

LNCipedia transcript ID: lnc-PITX1-2:1 
LNCipedia gene ID: lnc-PITX1-2
Ensembl Gene ID: ENSG00000248482
Ensembl Transcript ID: ENST00000509530
Location (hg38): chr5:135124380-135131249
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 541 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009791; ENST00000509530; ENST00000509530.1; CTC-276P9.3-001; OTTHUMT00000371551.1; NONHSAT103897
Alternative gene names: XLOC_005010; linc-PITX1-1; ENSG00000248482; CTC-276P9.3; ENSG00000248482.1; OTTHUMG00000163061.1; AC008406.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -191.569 non-coding 
CPAT coding probability 31.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PITX1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PITX1-2:1
3.1 lnc-PITX1-2:1
4.0 lnc-PITX1-2:1
4.1 lnc-PITX1-2:1
5.0 lnc-PITX1-2:1
5.1 lnc-TIFAB-9:1
5.2 lnc-PITX1-2:1