Transcript: lnc-POLD3-3:1

Basic information

LNCipedia transcript ID: lnc-POLD3-3:1 
LNCipedia gene ID: lnc-POLD3-3
Ensembl Gene ID: ENSG00000255440
Ensembl Transcript ID: ENST00000524441
Location (hg38): chr11:74409060-74416379
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 639 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000524441; ENST00000524441.1; RP11-632K5.2-001; OTTHUMT00000385555.1; NONHSAT022900
Alternative gene names: ENSG00000255440; RP11-632K5.2; ENSG00000255440.1; OTTHUMG00000165649.1; AP001085.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -107.3875 non-coding 
CPAT coding probability 9.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-POLD3-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-POLD3-1:1
3.1 lnc-POLD3-3:1
4.0 lnc-POLD3-3:1
4.1 lnc-POLD3-3:1
5.0 lnc-POLD3-3:1
5.1 lnc-TCIRG1-141:1
5.2 lnc-POLD3-3:1