Transcript: lnc-PPA2-4:1

Basic information

LNCipedia transcript ID: lnc-PPA2-4:1 
LNCipedia gene ID: lnc-PPA2-4
Ensembl Gene ID: ENSG00000251259
Ensembl Transcript ID: ENST00000504082
Location (hg38): chr4:105137280-105140619
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 549 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007807; ENST00000504082; ENST00000504082.1; AC004069.2-001; OTTHUMT00000363314.1; NONHSAT097664
Alternative gene names: XLOC_004032; linc-CXXC4-1; ENSG00000251259; AC004069.2; ENSG00000251259.1; OTTHUMG00000160994.1; AC004069.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.057 non-coding 
CPAT coding probability 6.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PPA2-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PPA2-3:1
3.1 lnc-PPA2-4:1
4.0 lnc-PPA2-4:1
4.1 lnc-PPA2-4:1
5.0 lnc-PPA2-4:1
5.1 lnc-SLC9B2-28:1
5.2 lnc-PPA2-4:1