Transcript: lnc-PPM1M-2:2

Basic information

LNCipedia transcript ID: lnc-PPM1M-2:2 
LNCipedia gene ID: lnc-PPM1M-2
Location (hg38): chr3:52239264-52241096
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1094 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00005410
Alternative gene names: XLOC_002652; linc-PPM1M-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -102.7823 non-coding 
CPAT coding probability 0.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PPM1M-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PPM1M-2:2
3.1 lnc-PPM1M-2:2
4.0 lnc-PPM1M-2:2
4.1 lnc-PPM1M-2:2
5.0 lnc-PPM1M-2:2
5.1 lnc-SPCS1-19:6
5.2 lnc-PPM1M-2:2