Transcript: SPINT1-AS1:30

Basic information

LNCipedia transcript ID: SPINT1-AS1:30 
HGNC Gene Symbol: SPINT1-AS1    
HGNC Full Gene Name: SPINT1 antisense RNA 1
Ensembl Gene ID: ENSG00000261183
Ensembl Transcript ID: ENST00000568419
Location (hg38): chr15:40835997-40844284
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 629 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000568419.1; RP11-532F12.5-005; OTTHUMT00000421223.1; NONHSAT041885
Alternative gene names: ENSG00000261183.1; RP11-532F12.5; OTTHUMG00000172899.1; ENSG00000261183.5; SPINT1-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -0.377 non-coding 
CPAT coding probability 2.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SPINT1-AS1:30 no no no no

Available literature

  1. Wang (2017), Characterization of long noncoding RNA and messenger RNA signatures in melanoma tumorigenesis and metastasis., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PPP1R14D-1:4
4.0 lnc-PPP1R14D-1:4
4.1 lnc-PPP1R14D-1:4
5.0 lnc-PPP1R14D-1:4
5.1 SPINT1-AS1:15
5.2 SPINT1-AS1:30