Transcript: lnc-PPP1R3B-2:4

Basic information

LNCipedia transcript ID: lnc-PPP1R3B-2:4 
LNCipedia gene ID: lnc-PPP1R3B-2
Location (hg38): chr8:9254805-9260278
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 335 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00014927; NONHSAT124936
Alternative gene names: XLOC_006999; linc-PPP1R3B-6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -145.162 non-coding 
CPAT coding probability 4.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PPP1R3B-2:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PPP1R3B-1:4
3.1 lnc-PPP1R3B-2:4
4.0 lnc-PPP1R3B-2:4
4.1 lnc-PPP1R3B-2:4
5.0 lnc-PPP1R3B-2:4
5.1 lnc-PINX1-50:4
5.2 lnc-PPP1R3B-2:4