Transcript: lnc-PPP1R3D-3:2

Basic information

LNCipedia transcript ID: lnc-PPP1R3D-3:2 
LNCipedia gene ID: lnc-PPP1R3D-3
Location (hg38): chr20:60469577-60473022
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 459 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00028721
Alternative gene names: XLOC_013827; linc-PPP1R3D-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -69.8187 non-coding 
CPAT coding probability 3.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PPP1R3D-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PPP1R3D-3:2
3.1 lnc-PPP1R3D-3:2
4.0 lnc-PPP1R3D-3:2
4.1 lnc-PPP1R3D-3:2
5.0 lnc-PPP1R3D-3:2
5.1 lnc-SPATA2-136:2
5.2 lnc-PPP1R3D-3:2