Transcript: lnc-PPP1R3D-3:5

Basic information

LNCipedia transcript ID: lnc-PPP1R3D-3:5 
LNCipedia gene ID: lnc-PPP1R3D-3
RefSeq ID: NR_109903
Location (hg38): chr20:60469609-60472976
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 381 bp
Exons: 2
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_109903; NR_109903.1
Alternative gene names: LOC101928048


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -69.8187 non-coding 
CPAT coding probability 3.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PPP1R3D-3:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PPP1R3D-3:5
4.0 lnc-PPP1R3D-3:5
4.1 lnc-PPP1R3D-3:5
5.0 lnc-PPP1R3D-3:5
5.1 lnc-SPATA2-136:4
5.2 lnc-PPP1R3D-3:5