Transcript: lnc-PPP2R2A-2:1

Basic information

LNCipedia transcript ID: lnc-PPP2R2A-2:1 
LNCipedia gene ID: lnc-PPP2R2A-2
Ensembl Gene ID: ENSG00000254362
Ensembl Transcript ID: ENST00000518031
Location (hg38): chr8:26440491-26442595
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 568 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000518031.1; RP11-14I17.3-001; OTTHUMT00000376747.1; NONHSAT125652
Alternative gene names: ENSG00000254362.1; RP11-14I17.3; OTTHUMG00000164015.1; AC011726.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -180.6908 non-coding 
CPAT coding probability 0.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PPP2R2A-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PPP2R2A-2:1
4.0 lnc-PPP2R2A-2:1
4.1 lnc-PPP2R2A-2:1
5.0 lnc-PPP2R2A-2:1
5.1 lnc-RHOBTB2-80:1
5.2 lnc-PPP2R2A-2:1