Transcript: lnc-PRDM1-2:1

Basic information

LNCipedia transcript ID: lnc-PRDM1-2:1 
LNCipedia gene ID: lnc-PRDM1-2
Location (hg38): chr6:106168494-106181290
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 631 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00011910; NONHSAT114229
Alternative gene names: XLOC_005411; linc-AIM1-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -63.164 non-coding 
CPAT coding probability 0.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRDM1-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PRDM1-2:1
3.1 lnc-PRDM1-2:1
4.0 lnc-PRDM1-2:1
4.1 lnc-PRDM1-2:1
5.0 lnc-PRDM1-2:1
5.1 lnc-SMPD2-53:1
5.2 lnc-PRDM1-2:1