Transcript: lnc-PREX1-1:2

Basic information

LNCipedia transcript ID: lnc-PREX1-1:2 
LNCipedia gene ID: lnc-PREX1-1
Ensembl Gene ID: ENSG00000278231
Ensembl Transcript ID: ENST00000618168
Location (hg38): chr20:48821688-48849458
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 366 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000618168.1
Alternative gene names: ENSG00000278231.1; RP5-906C1.1; AL133342.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -311.3102 non-coding 
CPAT coding probability 2.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PREX1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-PREX1-1:2
4.1 lnc-PREX1-1:2
5.0 lnc-PREX1-1:2
5.1 lnc-SULF2-34:2
5.2 lnc-PREX1-1:2