Transcript: lnc-PRL-3:1

Basic information

LNCipedia transcript ID: lnc-PRL-3:1 
LNCipedia gene ID: lnc-PRL-3
Location (hg38): chr6:22589137-22593833
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 742 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00011467; ENST00000427775; ENST00000427775.1; RP1-309H15.2-001; OTTHUMT00000039994.1; NONHSAT108081
Alternative gene names: XLOC_005640; linc-PRL-2; ENSG00000228772; RP1-309H15.2; ENSG00000228772.1; OTTHUMG00000014347.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -156.1004 non-coding 
CPAT coding probability 1.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRL-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PRL-3:1
3.1 lnc-PRL-3:1
4.0 lnc-PRL-3:1
4.1 lnc-PRL-3:1
5.0 lnc-PRL-3:1
5.1 lnc-C6orf62-54:5
5.2 lnc-PRL-3:1

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