Transcript: lnc-PSMA2-1:1

Basic information

LNCipedia transcript ID: lnc-PSMA2-1:1 
LNCipedia gene ID: lnc-PSMA2-1
Location (hg38): chr7:42972267-43044605
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 636 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00013161; ENST00000456114; ENST00000456114.1; AC005537.2-001; OTTHUMT00000338679.2; NONHSAT120280
Alternative gene names: XLOC_006422; linc-PSMA2; ENSG00000232006; AC005537.2; ENSG00000232006.1; OTTHUMG00000155182.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -196.8452 non-coding 
CPAT coding probability 0.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PSMA2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PSMA2-1:1
3.1 lnc-PSMA2-1:1
4.0 lnc-PSMA2-1:1
4.1 lnc-PSMA2-1:1
5.0 lnc-PSMA2-1:1
5.1 lnc-TNS3-80:14
5.2 lnc-PSMA2-1:1