Transcript: lnc-PSMA2-1:2

Basic information

LNCipedia transcript ID: lnc-PSMA2-1:2 
LNCipedia gene ID: lnc-PSMA2-1
Ensembl Gene ID: ENSG00000232006
Ensembl Transcript ID: ENST00000609382
Location (hg38): chr7:42972624-43059550
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 813 bp
Exons: 4
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000609382.1; ENST00000609382.3
Alternative gene names: ENSG00000232006.4; AC005537.2; ENSG00000232006.8; AC005537.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 75.9064 coding 
CPAT coding probability 12.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PSMA2-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PSMA2-1:2
4.0 lnc-PSMA2-1:2
4.1 lnc-PSMA2-1:2
5.0 lnc-PSMA2-1:2
5.1 lnc-TNS3-80:10
5.2 lnc-PSMA2-1:2