Transcript: lnc-PTEN-11:1

Basic information

LNCipedia transcript ID: lnc-PTEN-11:1 
LNCipedia gene ID: lnc-PTEN-11
Location (hg38): chr10:88213909-88217824
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2549 bp
Exons: 2
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT015471; FPKM1_group_3658_transcript_4
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -1.8375 non-coding 
CPAT coding probability 0.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PTEN-11:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PTEN-11:1
4.0 lnc-PTEN-11:1
4.1 lnc-PTEN-11:1
5.0 lnc-PTEN-11:1
5.1 lnc-SMC3-295:1
5.2 lnc-PTEN-11:1