Transcript: lnc-PTP4A3-3:2

Basic information

LNCipedia transcript ID: lnc-PTP4A3-3:2 
LNCipedia gene ID: lnc-PTP4A3-3
Location (hg38): chr8:141325039-141327091
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1458 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00014879; NONHSAT129420
Alternative gene names: XLOC_006946; linc-PTP4A3-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -29.6074 non-coding 
CPAT coding probability 31.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PTP4A3-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PTP4A3-3:2
3.1 lnc-PTP4A3-3:2
4.0 lnc-PTP4A3-3:2
4.1 lnc-PTP4A3-3:2
5.0 lnc-PTP4A3-3:2
5.1 lnc-GPT-91:2
5.2 lnc-PTP4A3-3:2