Transcript: lnc-PXDC1-1:7

Basic information

LNCipedia transcript ID: lnc-PXDC1-1:7 
LNCipedia gene ID: lnc-PXDC1-1
Ensembl Gene ID: ENSG00000228793
Ensembl Transcript ID: ENST00000443445
Location (hg38): chr6:3594247-3624747
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 789 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011435; ENST00000443445; ENST00000443445.1; RP1-223B1.1-001; OTTHUMT00000039687.1; NONHSAT107169
Alternative gene names: XLOC_005584; linc-SLC22A23; ENSG00000228793; RP1-223B1.1; ENSG00000228793.1; OTTHUMG00000014145.1; AL138881.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -59.3084 non-coding 
CPAT coding probability 6.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PXDC1-1:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PXDC1-2:2
3.1 lnc-PXDC1-2:2
4.0 lnc-PXDC1-1:7
4.1 lnc-PXDC1-1:7
5.0 lnc-PXDC1-1:7
5.1 lnc-ECI2-37:6
5.2 lnc-PXDC1-1:7