Transcript: lnc-PYGL-1:1

Basic information

LNCipedia transcript ID: lnc-PYGL-1:1 
LNCipedia gene ID: lnc-PYGL-1
Ensembl Gene ID: ENSG00000258711
Ensembl Transcript ID: ENST00000553648
Location (hg38): chr14:50956259-50962002
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4714 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000502842; TCONS_00022409; ENST00000553648.2; RP11-218E20.3-001; OTTHUMT00000411200.2; NONHSAT036825
Alternative gene names: ENSG00000249046; XLOC_011019; linc-PYGL; ENSG00000258711.2; RP11-218E20.3; OTTHUMG00000171001.2; AL358334.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 57.8771 non-coding 
CPAT coding probability 6.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PYGL-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PYGL-1:1
3.1 lnc-PYGL-1:1
4.0 lnc-PYGL-1:1
4.1 lnc-PYGL-1:1
5.0 lnc-PYGL-1:1
5.1 lnc-RTN1-103:1
5.2 lnc-PYGL-1:1