Transcript: lnc-RASA1-2:2

Basic information

LNCipedia transcript ID: lnc-RASA1-2:2 
LNCipedia gene ID: lnc-RASA1-2
Ensembl Gene ID: ENSG00000249061
Ensembl Transcript ID: ENST00000515750
Location (hg38): chr5:87120148-87137698
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 292 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000515750; ENST00000515750.1; RP11-72L22.1-002; OTTHUMT00000370321.1; NONHSAT102586
Alternative gene names: ENSG00000249061; RP11-72L22.1; ENSG00000249061.1; OTTHUMG00000162750.1; AC109492.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -276.3179 non-coding 
CPAT coding probability 1.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RASA1-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RASA1-1:2
3.1 lnc-RASA1-2:2
4.0 lnc-RASA1-2:2
4.1 lnc-RASA1-2:2
5.0 lnc-RASA1-2:2
5.1 lnc-MSH3-49:2
5.2 lnc-RASA1-2:2