Transcript: lnc-RBM4-1:2

Basic information

LNCipedia transcript ID: lnc-RBM4-1:2 
LNCipedia gene ID: lnc-RBM4-1
Ensembl Gene ID: ENSG00000258297
Ensembl Transcript ID: ENST00000548810
Location (hg38): chr11:66667824-66668374
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 551 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000548810.1; RP11-658F2.8-001; OTTHUMT00000409100.1; NONHSAT140028
Alternative gene names: ENSG00000258297.1; RP11-658F2.8; OTTHUMG00000170428.1; AP001157.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -138.0399 non-coding 
CPAT coding probability 2.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RBM4-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RBM4-1:2
4.0 lnc-RBM4-1:2
4.1 lnc-RBM4-1:2
5.0 lnc-RBM4-1:2
5.1 lnc-C11orf80-1:2
5.2 lnc-RBM4-1:2