Transcript: lnc-VPS50-1:11

Basic information

LNCipedia transcript ID: lnc-VPS50-1:11 
LNCipedia gene ID: lnc-VPS50-1
Ensembl Gene ID: ENSG00000237819
Ensembl Transcript ID: ENST00000419668
Location (hg38): chr7:92854909-92917174
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 527 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000419668.1; AC002454.1-003; OTTHUMT00000341807.1; NONHSAT121996
Alternative gene names: ENSG00000237819.1; AC002454.1; OTTHUMG00000155818.1; ENSG00000237819.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -33.4441 non-coding 
CPAT coding probability 0.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-VPS50-1:11 no no no no

Available literature

  1. Cao (2016), Microarray profiling of bone marrow long non-coding RNA expression in Chinese pediatric acute myeloid leukemia patients., Oncol. Rep.
  2. Wang (2015), Genome-Wide Microarray Analysis of Long Non-Coding RNAs in Eutopic Secretory Endometrium with Endometriosis., Cell. Physiol. Biochem.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RBM48-1:4
4.0 lnc-RBM48-1:4
4.1 lnc-CCDC132-1:12
5.0 lnc-CCDC132-1:12
5.1 lnc-LAMTOR4-100:11
5.2 lnc-VPS50-1:11