Transcript: lnc-REG3G-3:1

Basic information

LNCipedia transcript ID: lnc-REG3G-3:1 
LNCipedia gene ID: lnc-REG3G-3
Ensembl Gene ID: ENSG00000229494
Ensembl Transcript ID: ENST00000439259
RefSeq ID: NR_110287
Location (hg38): chr2:78088730-78127806
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1103 bp
Exons: 6
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00002942; ENST00000439259; ENST00000439259.1; AC012494.1-001; OTTHUMT00000328255.1; NONHSAT071843; NR_110287; NR_110287.1
Alternative gene names: XLOC_001543; linc-REG3G-2; ENSG00000229494; AC012494.1; ENSG00000229494.1; OTTHUMG00000152846.1; LOC101927948


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 40.4085 non-coding 
CPAT coding probability 9.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-REG3G-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-REG3G-3:1
3.1 lnc-REG3G-3:1
4.0 lnc-REG3G-3:1
4.1 lnc-REG3G-3:1
5.0 lnc-REG3G-3:1
5.1 lnc-POLE4-78:1
5.2 lnc-REG3G-3:1