Transcript: lnc-RHOJ-1:1

Basic information

LNCipedia transcript ID: lnc-RHOJ-1:1 
LNCipedia gene ID: lnc-RHOJ-1
Ensembl Gene ID: ENSG00000261242
Ensembl Transcript ID: ENST00000561909
Location (hg38): chr14:63543569-63544664
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1096 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000561909.1; CTD-2302E22.4-001; OTTHUMT00000421531.1; NONHSAT037304
Alternative gene names: ENSG00000261242.1; CTD-2302E22.4; OTTHUMG00000172963.1; AL136038.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -70.6924 non-coding 
CPAT coding probability 14.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RHOJ-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RHOJ-1:1
4.0 lnc-RHOJ-1:1
4.1 lnc-RHOJ-1:1
5.0 lnc-RHOJ-1:1
5.1 lnc-ACTR10-69:1
5.2 lnc-RHOJ-1:1