Transcript: lnc-RMI1-2:1

Basic information

LNCipedia transcript ID: lnc-RMI1-2:1 
LNCipedia gene ID: lnc-RMI1-2
Location (hg38): chr9:84075661-84082776
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 549 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000423515.1; RP11-158D2.2-001; OTTHUMT00000052872.1; NONHSAT132771
Alternative gene names: ENSG00000227463.1; RP11-158D2.2; OTTHUMG00000020115.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -49.9131 non-coding 
CPAT coding probability 1.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RMI1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RMI1-2:1
4.0 lnc-RMI1-2:1
4.1 lnc-RMI1-2:1
5.0 lnc-RMI1-2:1
5.1 lnc-SECISBP2-76:5
5.2 lnc-RMI1-2:1