Transcript: lnc-RNF7-1:1

Basic information

LNCipedia transcript ID: lnc-RNF7-1:1 
LNCipedia gene ID: lnc-RNF7-1
Location (hg38): chr3:141749887-141774698
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 573 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00006247; NONHSAT092441
Alternative gene names: XLOC_002840; linc-GRK7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -150.9231 non-coding 
CPAT coding probability 1.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RNF7-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RNF7-1:1
3.1 lnc-RNF7-1:1
4.0 lnc-RNF7-1:1
4.1 lnc-RNF7-1:1
5.0 lnc-RNF7-1:1
5.1 lnc-PXYLP1-11:1
5.2 lnc-RNF7-1:1