Transcript: lnc-USP44-6:1

Basic information

LNCipedia transcript ID: lnc-USP44-6:1 
LNCipedia gene ID: lnc-USP44-6
Ensembl Gene ID: ENSG00000258313
Ensembl Transcript ID: ENST00000551656
Location (hg38): chr12:95387890-95388558
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 369 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000551656; ENST00000551656.1; RP11-167N24.5-001; OTTHUMT00000408216.1; NONHSAT030024
Alternative gene names: ENSG00000258313; RP11-167N24.5; ENSG00000258313.1; OTTHUMG00000170258.1; AC084879.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -81.9532 non-coding 
CPAT coding probability 1.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-USP44-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-167N24.6.1-2:1
3.1 lnc-RP11-167N24.6.1-2:1
4.0 lnc-RP11-167N24.6.1-2:1
4.1 lnc-RP11-167N24.6.1-2:1
5.0 lnc-RP11-167N24.6.1-2:1
5.1 lnc-NTN4-12:1
5.2 lnc-USP44-6:1