Transcript: lnc-USP44-4:1

Basic information

LNCipedia transcript ID: lnc-USP44-4:1 
LNCipedia gene ID: lnc-USP44-4
Location (hg38): chr12:95407935-95436828
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 458 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000550470; ENST00000550470.1; RP11-167N24.3-001; OTTHUMT00000408218.1; NONHSAT030026
Alternative gene names: ENSG00000257943; RP11-167N24.3; ENSG00000257943.1; OTTHUMG00000170260.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -246.0011 non-coding 
CPAT coding probability 1.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-USP44-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-167N24.6.1-4:1
3.1 lnc-RP11-167N24.6.1-4:1
4.0 lnc-RP11-167N24.6.1-4:1
4.1 lnc-RP11-167N24.6.1-4:1
5.0 lnc-RP11-167N24.6.1-4:1
5.1 lnc-NTN4-10:1
5.2 lnc-USP44-4:1

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