Transcript: LINC02212:10

Basic information

LNCipedia transcript ID: LINC02212:10 
HGNC Gene Symbol: LINC02212    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2212
Ensembl Gene ID: ENSG00000249396
Ensembl Transcript ID: ENST00000515243
RefSeq ID: NR_104606
Location (hg38): chr5:10493527-10502728
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2130 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00009604; ENST00000515243; ENST00000515243.1; RP11-1C1.4-001; OTTHUMT00000367039.1; NONHSAT100452; NR_104606; NR_104606.1
Alternative gene names: XLOC_004734; linc-CMBL-1; ENSG00000249396; RP11-1C1.4; ENSG00000249396.1; OTTHUMG00000162051.1; LINC02212; LOC101929412


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -77.079 non-coding 
CPAT coding probability 3.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02212:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-1C1.5.1-1:1
3.1 lnc-RP11-1C1.5.1-1:1
4.0 lnc-RP11-1C1.5.1-1:1
4.1 lnc-RP11-1C1.5.1-1:1
5.0 lnc-RP11-1C1.5.1-1:1
5.1 LINC02212:3
5.2 LINC02212:10