Transcript: LINC02212:15

Basic information

LNCipedia transcript ID: LINC02212:15 
LNCipedia gene ID: LINC02212
Ensembl Gene ID: ENSG00000249166
Ensembl Transcript ID: ENST00000510562
Location (hg38): chr5:10493291-10494094
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 415 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009603; ENST00000510562; ENST00000510562.1; RP11-1C1.6-001; OTTHUMT00000367042.1; NONHSAT100450
Alternative gene names: XLOC_004734; linc-CMBL-1; ENSG00000249166; RP11-1C1.6; ENSG00000249166.1; OTTHUMG00000162054.1; AC092336.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -22.6916 non-coding 
CPAT coding probability 3.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02212:15 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-1C1.5.1-1:2
3.1 lnc-RP11-1C1.5.1-1:2
4.0 lnc-RP11-1C1.5.1-1:2
4.1 lnc-RP11-1C1.5.1-1:2
5.0 lnc-RP11-1C1.5.1-1:2
5.1 LINC02212:8
5.2 LINC02212:15