Transcript: lnc-ST20-MTHFS-1:1

Basic information

LNCipedia transcript ID: lnc-ST20-MTHFS-1:1 
LNCipedia gene ID: lnc-ST20-MTHFS-1
Ensembl Gene ID: ENSG00000261229
Ensembl Transcript ID: ENST00000567415
Location (hg38): chr15:79843547-79844304
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 758 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000567415.1; RP11-38G5.4-001; OTTHUMT00000433308.1; NONHSAT047667
Alternative gene names: ENSG00000261229.1; RP11-38G5.4; OTTHUMG00000176724.1; ENSG00000261229.6; AC021483.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -253.9343 non-coding 
CPAT coding probability 0.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ST20-MTHFS-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-38G5.1.1-1:1
4.0 lnc-RP11-38G5.1.1-1:1
4.1 lnc-RP11-38G5.1.1-1:1
5.0 lnc-RP11-38G5.1.1-1:1
5.1 lnc-CHRNA3-34:1
5.2 lnc-ST20-MTHFS-1:1

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