Transcript: lnc-BIN3-4:1

Basic information

LNCipedia transcript ID: lnc-BIN3-4:1 
LNCipedia gene ID: lnc-BIN3-4
Ensembl Gene ID: ENSG00000251034
Ensembl Transcript ID: ENST00000514980
Location (hg38): chr8:22540845-22545405
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 4076 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000514980.1; RP11-582J16.4-001; OTTHUMT00000375892.1; NONHSAT125479
Alternative gene names: ENSG00000251034.1; RP11-582J16.4; OTTHUMG00000163841.1; AC037459.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -42.0185 non-coding 
CPAT coding probability 0.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BIN3-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-582J16.5.1-4:1
4.0 lnc-RP11-582J16.5.1-4:1
4.1 lnc-RP11-582J16.5.1-4:1
5.0 lnc-RP11-582J16.5.1-4:1
5.1 lnc-EGR3-11:1
5.2 lnc-BIN3-4:1