Transcript: lnc-RPS27L-9:9

Basic information

LNCipedia transcript ID: lnc-RPS27L-9:9 
LNCipedia gene ID: lnc-RPS27L-9
Location (hg38): chr15:62832124-62835397
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2978 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000558888.1; RP11-1069G10.1-002; OTTHUMT00000416586.1; NONHSAT046577
Alternative gene names: ENSG00000259370.1; RP11-1069G10.1; OTTHUMG00000172039.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -48.6817 non-coding 
CPAT coding probability 3.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RPS27L-9:9 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-625H11.1.1-3:4
4.0 lnc-RP11-625H11.1.1-3:4
4.1 lnc-RP11-625H11.1.1-3:4
5.0 lnc-RP11-625H11.1.1-3:4
5.1 lnc-ICE2-61:9
5.2 lnc-RPS27L-9:9