Transcript: lnc-THEGL-1:1

Basic information

LNCipedia transcript ID: lnc-THEGL-1:1 
LNCipedia gene ID: lnc-THEGL-1
Location (hg38): chr4:56622789-56626211
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3323 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; NONCODE v4
Alternative transcript names: ENST00000359909; TCONS_00007535; NONHSAT096509
Alternative gene names: ENSG00000250128; XLOC_003546; linc-REST


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 19.5306 non-coding 
CPAT coding probability 42.54% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-THEGL-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-630A13.2.1-1:1
3.1 lnc-RP11-630A13.2.1-1:1
4.0 lnc-RP11-630A13.2.1-1:1
4.1 lnc-RP11-630A13.2.1-1:1
5.0 lnc-RP11-630A13.2.1-1:1
5.1 lnc-CEP135-21:1
5.2 lnc-THEGL-1:1