Transcript: GATA6-AS1:29

Basic information

LNCipedia transcript ID: GATA6-AS1:29 
LNCipedia gene ID: GATA6-AS1
Location (hg38): chr18:22165166-22165679
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 390 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00026443; NONHSAT058606
Alternative gene names: XLOC_012786; linc-ABHD3-1; locus5689; BM742401


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -88.2591 non-coding 
CPAT coding probability 1.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
GATA6-AS1:29 no no no no

Available literature

  1. Wang (2016), Epigenetic silencing of tumor suppressor long non-coding RNA BM742401 in chronic lymphocytic leukemia., Oncotarget
  2. Park (2013), A known expressed sequence tag, BM742401, is a potent lincRNA inhibiting cancer metastasis., Exp. Mol. Med.
  3. Sigova (2013), Divergent transcription of long noncoding RNA/mRNA gene pairs in embryonic stem cells., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-863N1.2.1-3:1
3.1 lnc-RP11-863N1.2.1-5:1
4.0 lnc-RP11-863N1.2.1-5:1
4.1 GATA6-AS1:29
5.0 GATA6-AS1:29
5.1 GATA6-AS1:29
5.2 GATA6-AS1:29