Transcript: LINC02551:12

Basic information

LNCipedia transcript ID: LINC02551:12 
LNCipedia gene ID: LINC02551
Location (hg38): chr11:130862159-130867994
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3133 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000525716; ENST00000525716.1; RP11-890B15.3-001; OTTHUMT00000385644.1
Alternative gene names: ENSG00000255455; RP11-890B15.3; ENSG00000255455.1; OTTHUMG00000165662.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -56.9396 non-coding 
CPAT coding probability 2.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02551:12 no no no no

Available literature

  1. Balloy (2017), Bronchial Epithelial Cells from Cystic Fibrosis Patients Express a Specific Long Non-coding RNA Signature upon <i>Pseudomonas aeruginosa</i> Infection., Front Cell Infect Microbiol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-890B15.2.1-1:1
3.1 lnc-RP11-890B15.2.1-1:1
4.0 lnc-RP11-890B15.2.1-1:1
4.1 lnc-RP11-890B15.2.1-1:1
5.0 lnc-RP11-890B15.2.1-1:1
5.1 LINC02551:5
5.2 LINC02551:12