Transcript: lnc-NUPR2-4:2

Basic information

LNCipedia transcript ID: lnc-NUPR2-4:2 
LNCipedia gene ID: lnc-NUPR2-4
Ensembl Gene ID: ENSG00000233288
Ensembl Transcript ID: ENST00000429367
RefSeq ID: NR_108099
Location (hg38): chr7:56534230-56538130
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2741 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00012910; ENST00000429367; ENST00000429367.1; RP11-760D2.5-001; OTTHUMT00000343750.1; NONHSAT120765; NR_108099; NR_108099.1
Alternative gene names: XLOC_006457; linc-LOC389493-5; ENSG00000233288; RP11-760D2.5; ENSG00000233288.1; OTTHUMG00000156290.1; AC092447.5; LOC101928401


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 14.7334 non-coding 
CPAT coding probability 1.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NUPR2-4:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP4-725G10.1.1-4:2
3.1 lnc-RP4-725G10.1.1-4:2
4.0 lnc-RP4-725G10.1.1-4:2
4.1 lnc-RP4-725G10.1.1-4:2
5.0 lnc-RP4-725G10.1.1-4:2
5.1 lnc-PSPH-15:2
5.2 lnc-NUPR2-4:2