Transcript: lnc-MAP3K21-1:1

Basic information

LNCipedia transcript ID: lnc-MAP3K21-1:1 
LNCipedia gene ID: lnc-MAP3K21-1
Location (hg38): chr1:233422234-233422637
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 404 bp
Exons: 1
Sources: Nielsen et al.,2014
Alternative transcript names: predAs_chen_BX103814_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -38.044 non-coding 
CPAT coding probability 0.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAP3K21-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP5-862P8.2.1-1:1
4.0 lnc-RP5-862P8.2.1-1:1
4.1 lnc-RP5-862P8.2.1-1:1
5.0 lnc-RP5-862P8.2.1-1:1
5.1 lnc-KCNK1-3:1
5.2 lnc-MAP3K21-1:1