Transcript: lnc-RPIA-1:3

Basic information

LNCipedia transcript ID: lnc-RPIA-1:3 
LNCipedia gene ID: lnc-RPIA-1
Location (hg38): chr2:88765881-88776575
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 391 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; NONCODE v4
Alternative transcript names: ENST00000427055; NONHSAT072208
Alternative gene names: ENSG00000230006; ANKRD36BP2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 7.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RPIA-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RPIA-1:3
3.1 lnc-RPIA-1:3
4.0 lnc-RPIA-1:3
4.1 lnc-RPIA-1:3
5.0 lnc-RPIA-1:3
5.1 lnc-SLC9A4-190:3
5.2 lnc-RPIA-1:3